Luque et al. - Table 1

Journal of General Virology

Table 1. CpGV ORFs

The positions and orientations of 143 putative ORFs in the CpGV genome are shown and compared to homologues in selected other completely sequenced baculoviruses. Red, ORFs unique to CpGV; blue, ORFs present in all GVs and absent in NPV; green, ORFs conserved in all nine completely sequenced baculoviruses. A Cp79 homologue is found in all baculoviruses included in this table but is absent from HaSNPV. The presence of baculovirus early (E) and late (L) promoter elements, located within 120 nt of the ATG, is indicated in the 'Prom.' column. 'E' indicates a TATA sequence with a CAC/GT start site sequence 20–40 nt downstream. 'L' indicates the presence of an A/T/GTAAG motif. Homologous ORFs in the genomes of AcMNPV (Ayres et al., 1994), OpMNPV (Ahrens et al., 1997), LdMNPV (Kuzio et al., 1999), SeMNPV (IJkel et al., 1999), XcGV (Hayakawa et al., 1999) and PxGV (Hashimoto et al., 2000) are shown with the percentage amino acid sequence identity to the homologous CpGV ORF. Pairwise alignments were carried out using the GCG Gap algorithm (Devereux et al., 1984).

ORF	Name	Position	Length (aa)	Predicted M_r	Prom.	AcMNPV		OpMNPV		LdMNPV		SeMNPV		XcGV		PxGV
						ORF	ID (%)	ORF	ID (%)	ORF	ID (%)	ORF	ID (%)	ORF	ID (%)	ORF	ID (%)
1	granulin	1 747	248	29341	L	8	58	3	57	1	56	1	56	1	87	4	85
2		749 1273	174	19173	E, L	-	-	-	-	-	-	-	-	2	29	5	28
3	pk-1	1254 2093	279	32795		10	37	1	35	3	34	3	34	3	45	6	47
4		2173 2739	188	22157	E	-	-	-	-	-	-	-	-	7	37	8	29
^*5		2729 2971	80	9442	L	-	-	-	-	-	-	-	-	8	30	9	32
6		3122 3340	72	8611	L	-	-	-	-	-	-	-	-	-	-	-	-
7	ie-1	3392 4858	488	57921		147	27	145	22	15	24	132	22	9	31	10	32
8		4964 5542	192	21655		146	31	144	28	16	28	133	32	10	40	11	35
9		5582 5887	101	11573	E, L	145	36	142	36	17	36	134	36	11	52	12	64
10	chitinase	6028 7812	594	66669		126	62	124	63	70	60	19	57	103	62	-	-
11	cathepsin	7935 8936	333	37434	L	127	46	125	47	78	45	16	48	58	54	-	-
12		9016 9249	77	8966	L	-	-	-	-	-	-	-	-	-	-	-	-
13	gp37	9320 10075	251	28389	L	64	47	69	49	68	49	25	49	107	47	-	-
14	odv-e18	10148 10402	84	8928	L	143	41	140	33	19	44	136	42	12	74	13	61
15	p49	10403 11776	457	53124	E, L	142	37	139	38	20	39	137	40	13	46	14	46
16		12147 12737	196	23109	E	-	-	31	29	138	39	54	40	-	-	-	-
17	iap-3^†	12867 13694	275	31290	E	-	-	35	61	139	35	110	51	-	-	-	-
18	odv-e56	13732 14799	355	38679	E, L	148	46	146	49	14	48	6	48	15	57	16	67
19	orf15R	15173 15400	75	8959		29	31	39	38	39	30	128	25	16	35	17	28
20	orf16L	15460 16167	235	26209	L	-	-	-	-	-	-	-	-	17	57	20	56
21	orf17L	16436 16615	59	6723		-	-	-	-	-	-	-	-	-	-	-	-
22	orf17R	16838 17881	347	37209	L	-	-	-	-	-	-	-	-	19	56	21	39
23	^‡	17972 18430	152	16914	L	-	-	-	-	-	-	-	-	18	52	23	54
24	pe-38	18574 19722	382	43882	E	153	27	152	26	-	-	-	-	-	-	-	-
25		20168 20332	54	6205		-	-	-	-	-	-	-	-	-	-	-	-
26		20331 20693	120	13787	E, L	-	-	-	-	-	-	-	-	-	-	-	-
27		20612 21826	404	46696	E	-	-	-	-	-	-	-	-	-	-	-	-
28		22687 22920	77	9421	E, L	-	-	-	-	-	-	-	-	-	-	-	-
29		23135 24049	304	35062		-	-	-	-	-	-	-	-	25	31	24	22
30		24637 25182	181	21184	E	-	-	-	-	-	-	-	-	26	23	25	29
31		25313 27118	601	69450		23	25	21	24	130	30	8	32	27	35	26	48
32		27331 28671	446	50985	L	-	-	-	-	-	-	-	-	-	-	-	-
33		28743 29627	294	34340	L	-	-	-	-	-	-	-	-	29	36	28	45
34		29670 30359	229	26359		-	-	-	-	-	-	-	-	30/31	40/46	-	-
35		30253 30852	199	21987	L	115	44	115	46	143	43	50	41	32	46	29	52
36		30925 31167	80	8746		-	-	-	-	-	-	-	-	-	-	-	-
37	odv-e66	31210 33261	683	76736		46	55	50	60	131	41	57/114	34/31	149	43	30	54
38		33050 33391	113	12073	E, L	-	-	-	-	-	-	-	-	33	42	-	-
39		33480 33797	105	12470	L	-	-	-	-	-	-	-	-	34	45	31	40
40		33850 34179	109	12563		-	-	-	-	-	-	-	-	-	-	-	-
41	lef-2	34320 34835	171	20064		6	26	6	31	137	30	12	29	35	43	32	44
42	orf35Ra	34927 35175	82	9903	E	-	-	-	-	-	-	-	-	36	37	-	-
43		35222 35566	114	13505	E, L	-	-	-	-	-	-	-	-	-	-	-	-
44	orf36L	35631 36254	207	23915	L	-	-	-	-	-	-	-	-	-	-	-	-
45		36313 36777	154	17814		-	-	-	-	-	-	-	-	39	23	34	34
46	mp-nase	36835 38472	545	63012		-	-	-	-	-	-	-	-	40	37	35	34
47	p13	38479 39288	269	31236	L	-	-	-	-	-	-	56	53	43	50	36	55
48		39332 40450	372	42439	E, L	22	51	20	52	119	50	35	52	45	54	37	58
49		40447 40836	129	15205	L	-	-	-	-	-	-	-	-	46	42	-	-
50		40772 42955	727	83971	L	-	-	-	-	-	-	-	-	47	33	38	29
51		43372 44010	212	24026	L	-	-	-	-	-	-	-	-	-	-	-	-
52		43695 44723	342	38724	L	106/107	39/29	107	30	140	35	53	33	50	54	40	25
53		44830 44976	48	5579		110	30	111	29	106	42	60	42	51	44	41	49
54	v-ubi	45052 45336	94	10493	L	35	77	25	70	43	72	123	78	52	83	42	84
55		45415 46395	326	36807	E, L	109	32	109	39	107	37	59	37	53	40	43	44
56		46485 46694	69	8028	L	-	-	-	-	-	-	-	-	54	34	44	31
57	39K	46771 47496	241	28340		36	27	24	25	44	28	120	25	55	27	45	34
58	lef-11	47447 47851	134	15550		37	31	23	22	45	32	119	30	56	53	46	50
59	sod	47806 48204	132	14242	L	31	62	29	61	145	59	48	56	68	61	47	64
60	p74	48578 50644	688	77812	L	138	46	134	46	27	47	131	45	77	46	49	57
61		50863 51075	70	7930	L	-	-	-	-	-	-	-	-	-	-	-	-
62		51047 51616	189	21916	E, L	-	-	-	-	-	-	-	-	-	-	50	47
63	bro	51754 51921	55	6615	E	2	22	-	-	71	35	-	-	60	24	-	-
64		52634 53326	230	27450	E, L	-	-	-	-	-	-	-	-	66	31	-	-
65		53424 53663	79	9164	L	79	40	82	34	-	-	-	-	75	47	-	-
66	ptp-2	53818 54039	73	8730		-	-	9	47	-	-	26	38	-	-	-	-
67		54114 54377	87	10254	L	-	-	-	-	-	-	-	-	-	-	-	-
68	p47	54349 55731	460	54127		40	46	45	44	48	49	115	47	78	60	51	58
69		55770 56432	220	26722	L	38	43	22	44	46	44	118	46	79	67	52	65
70		56506 57060	184	20365	L	-	-	-	-	-	-	-	-	-	-	-	-
71	p24capsid	57130 57741	203	22466	L	129	31	127	31	-	-	10	33	80	52	53	58
72		57780 58124	114	13768		-	-	-	-	-	-	-	-	-	-	-	-
73	38.7kd	58315 58911	198	22819		13	27	12	25	122	22	13	29	81	36	54	36
74	lef-1	58892 59599	235	27701		14	38	13	38	123	41	14	44	82	54	55	52
75		59725 61341	538	60464	L	119	40	119	42	155	43	36	41	84	46	7	56
76		61590 62177	195	22336	E	-	-	-	-	-	-	-	-	85	29	56	35
^*77		62245 62556	103	12090	E	-	-	-	-	-	-	-	-	86	28	57	24
78		62565 62792	75	8819		-	-	-	-	-	-	-	-	-	-	-	-
79		62816 63286	156	17807	L	150	32	110	32	30	35	96	24	87	33	59	40
80	lef-6	63283 63588	101	12142		28	20	40	25	38	24	127	28	88	45	60	42
81	dbp	63667 64539	290	33873		25	28	43	28	47	27	126	29	89	31	61	32
82		64566 65486	306	35349	L	-	-	-	-	-	-	-	-	90	28	-	-
83		65328 66647	439	51416		103	37	104	39	104	37	62	42	91	58	63	54
84		66679 67008	109	11909	L	102	23	103	22	103	31	63	28	92	48	64	38
85		67067 68209	380	43047	E, L	101	28	102	25	102	30	64	29	93	51	66	50
86	p6.9	68241 68390	49	6276	L	100	63	101	68	101	44	65	55	94	74	67	81
87	lef-5	68491 69219	242	27520	E	99	47	100	46	100	49	66	51	95	57	69	54
88		69043 70074	343	40562		98	38	99	38	99	41	67	37	96	45	70	45
89		70242 70727	161	17704	L	96	37	97	37	98	39	69	42	97	48	71	38
90	helicase	70711 74106	1131	133305	L	95	30	96	30	97	31	70	33	98	41	72	39
91	odv-e25	74218 74859	213	23718	E, L	94	45	95	41	96	57	71	53	99	68	74	72
92		74949 75434	161	18589	L	93	38	94	36	95	38	72	37	100	46	75	47
93		75498 76253	251	29783	E, L	92	35	93	38	94	34	73	33	101	53	76	53
94	iap^†	76297 77028	243	27200	L	-	-	-	-	-	-	-	-	-	-	-	-
95	lef-4	77033 78475	480	54552	L	90	37	91	36	93	39	74	40	110	46	78	51
96	vp39capsid	78547 79404	285	32541	L	89	34	90	37	92	36	75	35	111	45	79	41
97	odv-ec27	79546 80412	288	33716	L	144	29	141	30	18	31	135	32	112	47	80	50
98	ptp-2	80726 81211	161	18492	E	-	-	9	47	-	-	26	28	-	-	-	-
99		81302 82486	394	47037		-	-	-	-	-	-	-	-	113	33	82	36
100		82518 82844	108	12543	L	-	-	-	-	-	-	-	-	116	45	83	52
101	vp91capsid	82879 84876	665	74165	E, L	83	35	86	33	91	36	77	33	118	40	84	49
102	tlp20	84857 85507	216	23642	L	82	23	85	25	90	23	78	25	119	26	85	29
103		85482 86057	191	22315	L	81	45	84	44	89	44	79	48	120	56	86	64
104	gp41	86083 86952	289	33265	L	80	38	83	31	88	39	80	36	121	52	87	49
105		86956 87291	111	12634		78	44	81	43	87	24	81	24	122	35	88	40
106	vlf-1	87248 88384	378	44319		77	35	80	33	86	35	82	34	123	56	89	49
107		88480 88734	84	9750	L	76	32	79	37	85	35	95	34	125	57	91	60
108		88846 89292	148	17414	L	75	29	78	25	84	35	94	33	126	39	92	47
109		89387 89962	191	22241		-	-	-	-	-	-	-	-	-	-	-	-
110		90293 90700	135	15644	E	-	-	-	-	-	-	-	-	-	-	-	-
111	dnapol	90820 93975	1051	121248		65	39	70	36	83	39	93	40	132	54	93	53
112	desmoplakin	93917 96073	718	82711		66	25	71	25	82	27	92	26	133	28	94	31
113	lef-3	96284 97345	353	40529	E	67	30	72	26	81	24	91	26	134	34	95	35
114		97314 97694	126	14541		68	32	73	29	80	31	90	27	135	44	96	52
115		97816 98322	168	19614		-	-	-	-	-	-	-	-	136	32	97	29
116	iap-5^†	98504 99331	275	31386	E	-	-	-	-	-	-	-	-	137	37	98	41
117	lef-9	99306 100805	499	57453	L	62	54	65	54	64	55	97	52	139	64	99	67
118	fp	100841 101326	161	19079	L	61	39	64	38	63	31	98	35	140	52	100	57
119		101439 101927	162	19500		-	-	-	-	-	-	-	-	169	45	65	29
120	dnaligase	101978 103690	570	66537		-	-	-	-	22	31	-	-	141	49	101	51
121		103990 104205	71	8330		-	-	-	-	-	-	-	-	142	22	102	34
^*122		104299 104499	66	7523		-	-	-	-	-	-	-	-	143	32	103	52
123	fgf	104589 105791	400	45263	E, L	32	23	27	27	156	22	38	26	144	36	104	33
124		105945 106244	99	11864		-	-	-	-	-	-	-	-	-	-	-	-
125	alk-exo	106407 107603	398	46126		133	37	131	37	157	39	41	39	145	46	106	44
126	helicase-2	107527 108900	457	51985		-	-	-	-	50	56	-	-	146	50	107	50
127	rr1	108989 110863	624	70148	E	-	-	32	51	148	52	139	31	-	-	-	-
128	rr2a	110991 112079	362	42502		-	-	34	53	147	56	-	-	-	-	-	-
129		112112 112498	128	14902		-	-	-	-	-	-	-	-	-	-	-	-
130		112675 113091	138	15406		-	-	-	-	-	-	-	-	-	-	108	43
131	lef-8	113169 115790	873	100911	E	50	53	54	52	51	54	112	55	148	66	109	67
132		115878 116273	131	14755		-	-	-	-	-	-	-	-	165	40	110	30
133		116336 116524	62	6623		-	-	-	-	-	-	-	-	170	42	-	-
134		116514 116915	133	15471	L	53	30	56	30	108	21	54	31	171	43	112	40
135		117049 118113	354	40144	E, L	-	-	-	-	-	-	-	-	172	31	113	25
136		118119 118340	73	8302	L	-	-	-	-	-	-	-	-	173	32	114	21
137	lef-10	118291 118560	89	9839	E, L	53a	33	57	16	56	32	106	34	174	43	-	-
138	vp1054	118418 119416	332	38765		54	37	58	34	57	37	105	35	175	51	115	46
139		119306 119626	106	11671	E	-	-	-	-	-	-	-	-	-	-	-	-
140		119727 120770	347	39393	E	-	-	-	-	-	-	-	-	178	34	117	34
141	egt	120853 122307	484	54692		15	42	14	43	125	42	27	43	-	-	118	46
142		122325 122528	67	7928		-	-	-	-	-	-	-	-	-	-	-	-
143	me53	122501 123412	303	35984		139	28	137	26	23	26	7	29	180	39	120	41

* These ORFs overlap with or are included within larger putative ORFs but were selected because they are present in the XcGV and PxGV genome.

† See text for details.

‡ Cp23 is homologous to Cp20 (orf16L). See text for details.